GgaEX6028296 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr28_random:91901-92474:+
Coord C1 exon
chr28_random:91901-91971
Coord A exon
chr28_random:92043-92190
Coord C2 exon
chr28_random:92339-92474
Length
148 bp
Sequences
Splice sites
3' ss Seq
CACCACCCCATGTCATGCAGGTG
3' ss Score
5.7
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GATGCGTCGTCCACATTGCCCGCTGCTGCTGGCCCTGCTGCTGCTGCTCTCCTGCCTGCGGGCTGATGGCA
Seq A exon
GTGCTCTGCGGGGTCAGATCATCGGGGGCCACGAGGCCAAGCCCCACTCCCACCCCTACATGGCGTACCTGAAGTTGAGGATGTCTGCCTGCGGAGGATTCCTGGTGGCCCCTGATTGGGTGATGACGGCCGCACACTGCTTGGGGGG
Seq C2 exon
AAACATCACCGTCATCCTGGGGGCTCACGATATCTACGAACCAGAGCAGAGCCAGCAGGTCCGAGGGGTCCTCAAATACTACCCACACCCCGCGTACGACCCCAACACCATGGCCAACGACATCATGCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013378-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.4=86.0)
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCGTCGTCCACATTGCC
R:
TGAGCAGCATGATGTCGTTGG
Band lengths:
205-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]