MmuEX6041688 @ mm10
Exon Skipping
Gene
ENSMUSG00000040314 | Ctsg
Description
cathepsin G [Source:MGI Symbol;Acc:MGI:88563]
Coordinates
chr14:56100974-56102574:-
Coord C1 exon
chr14:56102382-56102574
Coord A exon
chr14:56101597-56101744
Coord C2 exon
chr14:56100974-56101109
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGCCAGATCTTTCTTTGCAGGGA
3' ss Score
8.47
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGAAACCTTTCACACGAGCAGGAAAATAGATCTGTGACCTCTCAGAACCACCCTTCCTTCCTCTCTCTCCAGGGGAGGATAAAAGTCTGGCAGAGAAAAGCCCCGGCAGCAACTGACTAAGCAACGGTTCTGGAAAGATGCAGCCTCTCCTGCTCCTGTTGACCTTTATTCTACTCCAAGGAGATGAGGCAG
Seq A exon
GGAAGATCATTGGAGGCCGAGAAGCCAGGCCCCATTCCTACCCCTACATGGCATTTCTTCTGATCCAGAGTCCAGAAGGGCTGAGTGCTTGTGGAGGGTTTCTGGTGCGAGAAGACTTCGTCCTAACAGCAGCTCATTGCTTGGGAAG
Seq C2 exon
CTCCATAAATGTTACTCTAGGGGCCCACAACATCCAAATGCGAGAAAGGACCCAGCAACTCATCACAGTGCTCAGAGCCATCCGCCATCCTGATTACAATCCGCAGAACATCCGGAATGACATCATGCTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040314-'2-8,'2-5,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.6=94.0)
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTCTCAGAACCACCCT
R:
GTAATCAGGATGGCGGATGGC
Band lengths:
256-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types