GgaEX7011271 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L027]
Coordinates
chr28:1211292-1212697:-
Coord C1 exon
chr28:1211795-1212697
Coord A exon
chr28:1211576-1211723
Coord C2 exon
chr28:1211292-1211427
Length
148 bp
Sequences
Splice sites
3' ss Seq
CACCACCCCATGTCATGCAGGTG
3' ss Score
5.7
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AACGGCTGGGAAGAGCAGTCAGGAAGGAGAGCTTCTAACAGTGCAGGGCTGGGTGGCACAGCCTCCTCTGAGGCTGCAGCTCCCCATGCAAACTGCAGGCTCAGCTGCAGGAGGAAAGCCATCCACGAGCCAGGACGGGGAGAACACAGGTGTGCTGTGCTGCACATCGGGTCCGTGCCCTTTGCACAAAGATTGCTGAGCCGGGGCAGTGCTGCGCTGCTGTCCCACTGATTGCAGCCCCTGAGCACTTGGGCACGTGAGCAGCAGAGATGCAGATAGCCCGGCGGGATGCTGCACTGCTCTGATTAAAGCAATCAGCCCATCGCACATGGTTTCCTGGCTGTAGGGTACAGATGCTCCAAGCTATAAAAGCACCCCTTGGGCAGCAGGAGGGAGGCTCAGAGCTCCGAGCATCCAGCGGGGAGAGGAGATGCGTCGTCCACATTGCCCGCTGCTGCTGGCCCTGCTGCTGCTGCTCTCCTGCCTGCGGGCTGATGGCA
Seq A exon
GTGCTCTGCGGGGTCAGATCATCGGGGGCCACGAGGCCAAGCCCCACTCCCACCCCTACATGGCGTACCTGAAGTTGAGGATGTCTGCCTGCGGAGGATTCCTGGTGGCCCCTGATTGGGTGATGACGGCCGCACACTGCTTGGGGGG
Seq C2 exon
AAACATCACCGTCATCCTGGGGGCTCACGATATCTACGAACCAGAGCAGAGCCAGCAGGTCCGAGGGGTCCTCAAATACTACCCACACCCCGCGTACGACCCCAACACCATGGCCAACGACATCATGCTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013378-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.4=86.0)
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTACAGATGCTCCAAGCT
R:
GCGGGGTGTGGGTAGTATTTG
Band lengths:
249-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]