RnoEX6030651 @ rn6
Exon Skipping
Gene
ENSRNOG00000025293 | Prss57
Description
serine protease 57 [Source:RGD Symbol;Acc:1303330]
Coordinates
chr7:12798868-12802137:+
Coord C1 exon
chr7:12798868-12798949
Coord A exon
chr7:12800464-12800617
Coord C2 exon
chr7:12801993-12802137
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGCTGTACCTACTACCCCAGGTT
3' ss Score
5.93
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
ATGGTGCCTGGGACAGGAGGAGGCCGGGACTGCCTGACGCTGGTCGTAGCGACTGCCCTGACCCAGCTCCTGTGGCTCCCTG
Seq A exon
GTTGCTGCGGATCCCACATTGTTGGAGGCCATGAGGTGAAGCCACATGCCCGGCCCTACATGGCCTCTGTGAACTTCGAGGGCCATCACCATTGTGGAGGCTTCTTGTTCCATGCCCATTGGGTGCTGTCAGCTGCCCATTGCTTCAGTGACAG
Seq C2 exon
GGACCCCTCCACTGGCCTGGTGGTGCTTGGGGCCCATGCCCTGCTCACCCCGGAGCCCACACAACAGGTATTTGGCATTGCGGCTGTTGTCAGCCATCCTGATTTTGAGCCGACCACACAGGCCAATGACATCTGCCTGCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025293-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.0=86.5)
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGAGGAGGCCGGGA
R:
TAGCAGGCAGATGTCATTGGC
Band lengths:
213-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]