MmuEX6049620 @ mm9
Exon Skipping
Gene
ENSMUSG00000020323 | Prssl1
Description
protease, serine 57 [Source:MGI Symbol;Acc:MGI:1920356]
Coordinates
chr10:79248500-79251730:-
Coord C1 exon
chr10:79251588-79251730
Coord A exon
chr10:79250103-79250256
Coord C2 exon
chr10:79248500-79248644
Length
154 bp
Sequences
Splice sites
3' ss Seq
CATTGCCCCACCTCTTCCAGGTT
3' ss Score
9.34
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
GAACCGTTGGGTGCCTCCTGCACCTGCAGACCTCACCAGAAAGATGCCATCCTCTACAGCTATGGTGCCTGGGACAAGAGGAGGCTGGCACTGTCTGGTGCTGACTACAGCAGCTGCCCTGACCCAGCTCATGTGGCTCCCTG
Seq A exon
GTTGCTGTGGGTCCTACATTGTTGGAGGCCATGAGGTAACGCCACATTCCCGGCCCTATATGGCCTCTGTGAGCTTCGAGGGCCATCACTACTGTGGAGGCTTCCTGATTCATACCCATTGGGTGGTGTCAGCTGCCCATTGCTTCAGTGACAG
Seq C2 exon
GGACCCCTCCATGGGGCTGGTGGTGCTGGGGGCCCACGCACTGCTCGCCCCAGAGCCCACACAGCAGACATTTAGCATTGCAGCTGCTGTCAGCCATCCTGATTTCCAGCCTGCCACACAGGCCAACGATATCTGCCTGCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020323-'1-3,'1-2,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.0=86.5)
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAGACCTCACCAGAAA
R:
GCAGATATCGTTGGCCTGTGT
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: