MmuEX6049620 @ mm10
Exon Skipping
Gene
ENSMUSG00000020323 | Prss57
Description
protease, serine 57 [Source:MGI Symbol;Acc:MGI:1920356]
Coordinates
chr10:79784346-79789042:-
Coord C1 exon
chr10:79788843-79789042
Coord A exon
chr10:79787358-79787511
Coord C2 exon
chr10:79784346-79784609
Length
154 bp
Sequences
Splice sites
3' ss Seq
CATTGCCCCACCTCTTCCAGGTT
3' ss Score
9.34
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
AAGTGCCTGCTCCACCTTCTGACCACAGACCACAGACCCGGAACAACTTTCTGGACTGAACCGTTGGGTGCCTCCTGCACCTGCAGACCTCACCAGAAAGATGCCATCCTCTACAGCTATGGTGCCTGGGACAAGAGGAGGCTGGCACTGTCTGGTGCTGACTACAGCAGCTGCCCTGACCCAGCTCATGTGGCTCCCTG
Seq A exon
GTTGCTGTGGGTCCTACATTGTTGGAGGCCATGAGGTAACGCCACATTCCCGGCCCTATATGGCCTCTGTGAGCTTCGAGGGCCATCACTACTGTGGAGGCTTCCTGATTCATACCCATTGGGTGGTGTCAGCTGCCCATTGCTTCAGTGACAG
Seq C2 exon
TTGAACGGCTCTGCTGTCCTGGGCCCCGCTGTGAGGCTATTACGATTGCCTCGGAGAAATGCTAAGCCACCTGCTGCGGGCACGCGTTGCCATGTATCCGGCTGGGGCTTCGTGTCTGACTTTGAGGAGCCTCCGCCTGGACTGATGGAAGTCGAGGTGCGCATACTGGATCTGAGTGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAATCCTGCCATGCTCTGCACTCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020323_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.0=86.5)
C2:
PF0008921=Trypsin=PU(97.3=98.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAGACCTCACCAGAAA
R:
GGCTCCTCAAAGTCAGACACG
Band lengths:
253-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types