BtaEX0028711 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021616 | PRSS57
Description
protease, serine, 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
chr7:44907646-44909195:-
Coord C1 exon
chr7:44909092-44909195
Coord A exon
chr7:44908667-44908820
Coord C2 exon
chr7:44907646-44907790
Length
154 bp
Sequences
Splice sites
3' ss Seq
GCCACCCACCCTGCCTGCAGGCT
3' ss Score
8.64
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
AGGGACACACCTGCCTGTGACAGCCATGGGGCCTGGGGTGGGGGACTGGGGCCGCCTGCTGCTGACTGTGACCGCTGTCCTGACACTGCCCATGAGGCCCCCAG
Seq A exon
GCTCCTGGGGGGCACAGATCATTGGGGGCCACGAGGTGACCCCCCACTCCCGGCCCTATATGGCATCCGTGAAGTTCCAGGGCCAGCACCACTGCGGGGGCTTCCTGCTGAGGGCCCGCTGGGTTGTGTCGGCTGCCCACTGCTTCAGCGGCCG
Seq C2 exon
AGACCCCGGGACAGGCCTGGTAGTGCTGGGGGCCCATGCCTTGCGCACCAAGGAGGCCACACAGCAGGTGTTCAGCATCTCCGCTGTCATCACACACCCAGACTACCAGCCCACCACGCACACCAGTGACATCTGTCTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021616-'0-1,'0-0,1-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(20.0=86.5)
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACACCTGCCTGTGACAG
R:
GACAGATGTCACTGGTGTGCG
Band lengths:
238-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development