MmuEX0037460 @ mm9
Exon Skipping
Gene
ENSMUSG00000020323 | Prssl1
Description
protease, serine 57 [Source:MGI Symbol;Acc:MGI:1920356]
Coordinates
chr10:79247091-79250256:-
Coord C1 exon
chr10:79250103-79250256
Coord A exon
chr10:79248500-79248644
Coord C2 exon
chr10:79247091-79247354
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTTGTTGGCCTGCAGGGA
3' ss Score
9.6
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTTGCTGTGGGTCCTACATTGTTGGAGGCCATGAGGTAACGCCACATTCCCGGCCCTATATGGCCTCTGTGAGCTTCGAGGGCCATCACTACTGTGGAGGCTTCCTGATTCATACCCATTGGGTGGTGTCAGCTGCCCATTGCTTCAGTGACAG
Seq A exon
GGACCCCTCCATGGGGCTGGTGGTGCTGGGGGCCCACGCACTGCTCGCCCCAGAGCCCACACAGCAGACATTTAGCATTGCAGCTGCTGTCAGCCATCCTGATTTCCAGCCTGCCACACAGGCCAACGATATCTGCCTGCTAAGG
Seq C2 exon
TTGAACGGCTCTGCTGTCCTGGGCCCCGCTGTGAGGCTATTACGATTGCCTCGGAGAAATGCTAAGCCACCTGCTGCGGGCACGCGTTGCCATGTATCCGGCTGGGGCTTCGTGTCTGACTTTGAGGAGCCTCCGCCTGGACTGATGGAAGTCGAGGTGCGCATACTGGATCTGAGTGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAATCCTGCCATGCTCTGCACTCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020323-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=86.5)
A:
PF0008921=Trypsin=FE(21.3=100)
C2:
PF0008921=Trypsin=PU(97.3=98.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGGGCCATCACTACTGT
R:
CAGATCCAGTATGCGCACCTC
Band lengths:
254-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: