RnoEX6030650 @ rn6
Exon Skipping
Gene
ENSRNOG00000025293 | Prss57
Description
serine protease 57 [Source:RGD Symbol;Acc:1303330]
Coordinates
chr7:12800464-12803534:+
Coord C1 exon
chr7:12800464-12800617
Coord A exon
chr7:12801993-12802137
Coord C2 exon
chr7:12803271-12803534
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTGTTTGCCCGCAGGGA
3' ss Score
13.02
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTTGCTGCGGATCCCACATTGTTGGAGGCCATGAGGTGAAGCCACATGCCCGGCCCTACATGGCCTCTGTGAACTTCGAGGGCCATCACCATTGTGGAGGCTTCTTGTTCCATGCCCATTGGGTGCTGTCAGCTGCCCATTGCTTCAGTGACAG
Seq A exon
GGACCCCTCCACTGGCCTGGTGGTGCTTGGGGCCCATGCCCTGCTCACCCCGGAGCCCACACAACAGGTATTTGGCATTGCGGCTGTTGTCAGCCATCCTGATTTTGAGCCGACCACACAGGCCAATGACATCTGCCTGCTAAGG
Seq C2 exon
CTGAATGGCTCTGCTGTGCTGGGCCCCGCTGTGAGGCTATTGCGACTGCCTCGGAGAGGAGCTAAGCCTCCCGTGGCGGGCACCCGGTGCCGCGTATCTGGCTGGGGCTCCGTGTCTGACTTTGAGGAGCCTCCACCTGGGCTGATGGAAGTCGAGGTGCGCATACTAGACCTGAGCGTCTGCAACAGCTCCTGGCAGGGCCAGCTGAGTCCTGCCATGCTCTGTACCCACAGTGGGGACCGCCGGCGGCGTGGTTTCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025293-'1-4,'1-2,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=86.5)
A:
PF0008921=Trypsin=FE(21.3=100)
C2:
PF0008921=Trypsin=FE(38.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCATTGCTTCAGTGACAG
R:
TACAGAGCATGGCAGGACTCA
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]