BtaEX0028712 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021616 | PRSS57
Description
protease, serine, 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
chr7:44905750-44908820:-
Coord C1 exon
chr7:44908667-44908820
Coord A exon
chr7:44907646-44907790
Coord C2 exon
chr7:44905750-44906013
Length
145 bp
Sequences
Splice sites
3' ss Seq
CCCGCCCATTCCCCCCACAGAGA
3' ss Score
11.32
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
GCTCCTGGGGGGCACAGATCATTGGGGGCCACGAGGTGACCCCCCACTCCCGGCCCTATATGGCATCCGTGAAGTTCCAGGGCCAGCACCACTGCGGGGGCTTCCTGCTGAGGGCCCGCTGGGTTGTGTCGGCTGCCCACTGCTTCAGCGGCCG
Seq A exon
AGACCCCGGGACAGGCCTGGTAGTGCTGGGGGCCCATGCCTTGCGCACCAAGGAGGCCACACAGCAGGTGTTCAGCATCTCCGCTGTCATCACACACCCAGACTACCAGCCCACCACGCACACCAGTGACATCTGTCTGCTGCAG
Seq C2 exon
CTGAACAGCTCTGCCACCCTGGGTCCTGCAGTGGGACTACTGGGGCTGCCGCGGAGGGGCGCCAGGCCTCCCCGGGCCGGGACACGCTGCAAGGTGGCTGGCTGGGGCTCCGTGTCCGACTTCGAGGAACTGCCGCCTGGGCTGATGGAAGCTGAGGTCCGCGTGCTGGAGCTGGACGCCTGCAACAGCTCCTGGAAGGGGCAGCTGAGCCCTGCCATGCTCTGCACCCACAGTGGGGACCGCCGGCGACGTGGCTTCTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021616-'1-2,'1-1,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.0=86.5)
A:
PF0008921=Trypsin=FE(21.3=100)
C2:
PF0008921=Trypsin=FE(38.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCATCCGTGAAGTTCCAG
R:
CTCAGCTTCCATCAGCCCAG
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development