GgaEX6027959 @ galGal3
Exon Skipping
Gene
ENSGALG00000001842 | F1NFQ7_CHICK
Description
NA
Coordinates
chr28:2241178-2242181:-
Coord C1 exon
chr28:2242021-2242181
Coord A exon
chr28:2241737-2241881
Coord C2 exon
chr28:2241178-2241438
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCTCACAGCTCCCCCGTAGGCG
3' ss Score
3.96
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CCACCAGGTGCTCACAGCAGTTGGGTCATCGGGGGAAAGGCAGCGGTGCCGCACTCGCGGCCCTTCATCGCCTCCATCCAGATGGACGGGCAGCACTTCTGTGGGGGGTTCCTGGTGTGGCCCAGGTGGGTGATGACAGCCGCCCACTGCCCTGTTCCCAG
Seq A exon
GCGCGAGCCCTCCGTCCGCGTGGTGCTGGGAGCGCACAGCCTGGAGCAGCCCGAGGAGTCCCAACAGGTTTTCGGTGTCGAGGAATCCATCGCGCATCCCCTCTACAACCCCCGGACGGTGGACAACGACATCCGCATGCTCAGG
Seq C2 exon
CTGAACCACACGGCCACGCTGAACGCATTCGTGAAGCGCATCCGCCTGCCCCGGCCACGCATCGACCTGAAACCCGGCACCCTTTGCTCCGTGGTGGGTTGGGGGGACATTTCCAACTACGGCGAGAGGCCCATCCAGCTGATGGAGGCCAACACCACCATCGTCAAGAGGAGTCTGTGTCGGACCCTATGGAAGGGCCGTGTCTCGGGCAACATGCTGTGCGGGGCCAGCCGCAATGCCACGCTGCAGGGCGTCTGTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001842-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(23.9=84.9)
A:
PF0008921=Trypsin=FE(25.5=100)
C2:
PF0008921=Trypsin=FE(45.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCATCGCCTCCATCCAGA
R:
GTGGTGTTGGCCTCCATCAG
Band lengths:
258-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]