HsaEX1010660 @ hg38
Exon Skipping
Gene
ENSG00000100448 | CTSG
Description
cathepsin G [Source:HGNC Symbol;Acc:HGNC:2532]
Coordinates
chr14:24574675-24576260:-
Coord C1 exon
chr14:24576169-24576260
Coord A exon
chr14:24575265-24575412
Coord C2 exon
chr14:24574675-24574810
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGCCAAATGCTTCCTTCCAGGGG
3' ss Score
8.09
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCACAGCAGCAACTGACTGGGCAGCCTTTCAGGAAAGATGCAGCCACTCCTGCTTCTGCTGGCCTTTCTCCTACCCACTGGGGCTGAGGCAG
Seq A exon
GGGAGATCATCGGAGGCCGGGAGAGCAGGCCCCACTCCCGCCCCTACATGGCGTATCTTCAGATCCAGAGTCCAGCAGGTCAGAGCAGATGTGGAGGGTTCCTGGTGCGAGAAGACTTTGTGCTGACAGCAGCTCATTGCTGGGGAAG
Seq C2 exon
CAATATAAATGTCACCCTGGGCGCCCACAATATCCAGAGACGGGAAAACACCCAGCAACACATCACTGCGCGCAGAGCCATCCGCCACCCTCAATATAATCAGCGGACCATCCAGAATGACATCATGTTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100448_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.240 C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.6=94.0)
C2:
PF0008921=Trypsin=FE(20.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGCAGCAACTGACTGGG
R:
TGCAATAACATGATGTCATTCTGGA
Band lengths:
226-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains