GgaEX6028835 @ galGal4
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11771625-11774859:+
Coord C1 exon
chr3:11771625-11771687
Coord A exon
chr3:11772238-11772831
Coord C2 exon
chr3:11774762-11774859
Length
594 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTTTTTATTTTAGAGA
3' ss Score
9.4
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATCATGAAAGAATAGCACTGGGGAATGAAGAAGGGTTATTTGTTGTGCATGTCACCAAAGATG
Seq A exon
AGATAATCCGTGTTGGTGATAATAAGAAGGTTCATCAGATTGAGCTTATCCCAAGCGAACAGCTCATTGCAGTAATCTCAGGACGAAACCGTCACGTGCGACTTTTCCCTATGACAGCCCTGGATGGAAGGGAGACTGAGTTTTATAAGTTGGCAGAAACAAAAGGCTGCCAGTCGATAGTTTCTGGACACGTGCGCCATGGAGCCCTTACATGCCTTTGTGTAGCTATGAAAAGGCAAGTCCTCTGTTATGAACTAAATCAGAGTAAGACACGTCACAAAAAGATCAAGGAGATCCAAGTCCAGGGGAACGTCCAGTGGATGTCGGTCTTCAGTGAGCGTCTTTGTGTGGGCTACCAGTCAGGTTTCTTAAAGCATCCCCTTCATGGAGAAGGCAGCCCATACAGTCTGCTCCATCCAGATGACCACACGCTATCGTTTATCTCACAGCAGCCAACTGATGCCATCTGTGCAGTCGAAATCTCAAATAAAGAATACCTGCTGTGTTTTAGCAGCGTAGGGGTTTACGTTGACTGCCAGGGCCGGAGATCAAGACAACAAGAATTGATGTGGCCTGCAACTCCATCATCTTGCT
Seq C2 exon
GTTACAATGCACCATACCTCTCTGTGTATAGCGAAAATGCAATTGATATCTTTGACGTGAACTCCATGGAGTGGATTCAGACTATTCCTCTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'47-53,'47-51,48-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078017=CNH=FE(7.9=100)
A:
PF0078017=CNH=FE(74.7=100)
C2:
PF0078017=CNH=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]