GgaEX6029711 @ galGal4
Exon Skipping
Gene
ENSGALG00000010186 | CAPN1
Description
Calpain-1 catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:P00789]
Coordinates
chr3:29687253-29688540:-
Coord C1 exon
chr3:29688407-29688540
Coord A exon
chr3:29688131-29688299
Coord C2 exon
chr3:29687253-29687336
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTCACTGCCCGGTGCTCAGGCT
3' ss Score
4.55
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
ATCTGGCAGTTTGGTGAGTGGGTGGACGTGGTGGTGGACGACCTGCTGCCCACCAAGGACGGGGAGCTCCTGTTTGTGCATTCAGCAGAGTGCACAGAGTTCTGGAGTGCTCTGCTGGAGAAGGCTTACGCCAA
Seq A exon
GCTGAACGGCTGCTACGAGTCGCTCTCAGGGGGCAGCACCACTGAGGGCTTTGAGGATTTCACCGGCGGCGTAGCGGAGATGTATGACCTCAAGCGGGCACCGCGCAACATGGGCCACATCATCCGCAAGGCACTGGAGAGGGGGTCCCTGCTGGGCTGCTCCATCGAC
Seq C2 exon
ATCACAAGTGCCTTTGATATGGAAGCAGTGACCTTCAAGAAGCTGGTGAAGGGCCATGCCTATTCTGTCACCGCCTTCAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010186-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGCAGTTTGGTGAGTGG
R:
ATCTTTGAAGGCGGTGACAGA
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]