DreEX6099396 @ danRer10
Exon Skipping
Gene
ENSDARG00000052748 | capn1b
Description
calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
Coordinates
chr22:26292196-26294056:-
Coord C1 exon
chr22:26293923-26294056
Coord A exon
chr22:26292370-26292538
Coord C2 exon
chr22:26292196-26292279
Length
169 bp
Sequences
Splice sites
3' ss Seq
ACATGTTTATGTGCCTGTAGGCT
3' ss Score
7.98
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TTCTGGCAGTTTGGCGAGTGGGTAGACATTGTAATCGATGACCGCTTGCCTGTGAAGGATAAAGAGCTGATGTTTGTTCACTCAGCAGAGGGAAATGAGTTCTGGAGCGCCCTGCTGGAGAAGGCATATGCTAA
Seq A exon
GCTAAATGGCTCATATGAAGCTCTGTCCGGAGGTTCCACCACCGAAGGCTTTGAGGACTTTACTGGCGGAGTTGCCGAAATGTATGAACTGCGCAGCGCTCCCAAAGACCTGCACCGCATCATTGCCAAAGCCCTGGAGAGAGGCTCACTGCTGGGCTGCTCCATTGAT
Seq C2 exon
ATCACCAGTGCCTTTGACATGGAGGCTGTGACCTTTAAGAAGCTAGTGAAGGGCCATGCTTACTCCGTCACAGCTCTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052748-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTGGCGAGTGGGTAGAC
R:
TCTCTGAGAGCTGTGACGGAG
Band lengths:
211-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]