RnoEX0016650 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221364745-221366874:-
Coord C1 exon
chr1:221366741-221366874
Coord A exon
chr1:221366467-221366635
Coord C2 exon
chr1:221364745-221364828
Length
169 bp
Sequences
Splice sites
3' ss Seq
TGACCTGGAGCTGCCCACAGAGT
3' ss Score
1.77
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
CTGTGGCAGTTTGGGGAGTGGGTAGATGTGGTCGTGGATGATTTGCTACCCACCAAGGATGGAAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAGTTCTGGAGCGCTCTCCTGGAGAAAGCCTATGCAAA
Seq A exon
AGTGAATGGCAGCTATGAGGCCCTTTCGGGAGGCTGCACCTCAGAGGCCTTCGAGGACTTTACCGGTGGGGTCACTGAGTGGTACGATCTGCAGAAGGCACCCAGCGACCTCTACCAGATCATTCTGAAGGCCCTGGAACGAGGCTCCTTGCTGGGCTGCTCCATTAAT
Seq C2 exon
ATCTCCGATATCCGTGATTTGGAGGCTATTACTTTTAAGAACCTGGTGAGGGGCCATGCATACTCTGTGACGGATGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(9.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCAGTTTGGGGAGTG
R:
CTGCTTGGCATCCGTCACAG
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]