DreEX6003632 @ danRer10
Exon Skipping
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6573015-6576224:-
Coord C1 exon
chr7:6576091-6576224
Coord A exon
chr7:6575536-6575704
Coord C2 exon
chr7:6573015-6573098
Length
169 bp
Sequences
Splice sites
3' ss Seq
ACTTAGTCTGTCTTCCTCAGGCT
3' ss Score
7.5
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
TTCTGGCAGTTTGGTGAATGGGTGGACGTGGTGATCGACGACCGGCTGCCGACGAAGGATGGCAAACTGTTATTCGTGCACTCGGCGGAGGGTGGAGAGTTCTGGAGTGCTCTGCTGGAGAAGGCCTACGCCAA
Seq A exon
GCTGAACGGCTGTTACGAGGCTCTGTCTGGAGGCAGCACGTGTGAAGGCTTCGAGGATTTCACCGGTGGAGTGACAGAGATGTACGAGTTAAAGAAAGCTCCCGCTGACCTCTTCAGCATTATTGGCCGCGCCATCGAGAGAGGCTCGCTGCTGGGCTGCTCTATTGAT
Seq C2 exon
ATCACCAGTAAGTTTGACATGGAGGCGGTGACCTTTAAGAAGCTGGTCAAAGGCCACGCATACTCTGTGACCGGAGCAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199-'6-8,'6-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.7=100)
A:
PF0064816=Peptidase_C2=FE(18.7=100)
C2:
PF0064816=Peptidase_C2=FE(9.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCAGTTTGGTGAATGGG
R:
CTCTTCTGCTCCGGTCACAGA
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]