GgaEX6032778 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NFF7]
Coordinates
chr3:108404874-108405924:+
Coord C1 exon
chr3:108404874-108405047
Coord A exon
chr3:108405469-108405610
Coord C2 exon
chr3:108405740-108405924
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTTCATTTTTCCAGCAG
3' ss Score
8.29
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTGTACAATATGTTTCCCATCCTTGGACCCTTCCTGAAGGACAACAAAAGTTTTCTTGAGAATGTAAAAGAAGTCAATGATTTTATCAAGGTTACTTTCACAAAATATCTCCAAGTCCTGGACAAAAATGACCAGAGGAGCTTCATCGACGCTTTTCTTGTCAAACAACAAGAG
Seq A exon
CAGAATGAAAAGGCCAATAAATTTTTCGACGATGAAAACTTAACTGAGGTTGTGAGAAATCTGTTTACAGCTGGCATGGATACCACAGCCACCACTTTACGCTGGGGCCTTCTACTTATGATGAAATACCCTGAAATTCAGA
Seq C2 exon
AAAAAGTCCAGGAAGAAATAGATCGAGTGATCGGCTCAAACCCCCCAAGAACTGAGCATCGAACTAAAATGCCATACACGGATGCTGTTATACATGAAATTCAGAGGTTCGCTAATATCCTGCCACTGAACTTGCCTCATGAGACGACCATGGATGTCACTATCAAAGGCTATTTCATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690-'7-11,'7-9,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCCATCCTTGGACCCT
R:
ACAGCATCCGTGTATGGCATT
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]