GgaEX6032778 @ galGal3
Exon Skipping
Gene
ENSGALG00000016690 | F1NFF7_CHICK
Description
NA
Coordinates
chr3:111592465-111593515:+
Coord C1 exon
chr3:111592465-111592638
Coord A exon
chr3:111593060-111593201
Coord C2 exon
chr3:111593331-111593515
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTTCATTTTTCCAGCAG
3' ss Score
8.29
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTGTACAATATGTTTCCCATCCTTGGACCCTTCCTGAAGGACAACAAAAGTTTTCTTGAGAATGTAAAAGAAGTCAATGATTTTATCAAGGTTACTTTCACAAAATATCTCCAAGTCCTGGACAAAAATGACCAGAGGAGCTTCATCGACGCTTTTCTTGTCAAACAACAAGAG
Seq A exon
CAGAATGAAAAGGCCAATAAATTTTTCGACGATGAAAACTTAACTGAGGTTGTGAGAAATCTGTTTACAGCTGGCATGGATACCACAGCCACCACTTTACGCTGGGGCCTTCTACTTATGATGAAATACCCTGAAATTCAGA
Seq C2 exon
AAAAAGTCCAGGAAGAAATAGATCGAGTGATCGGCTCAAACCCCCCAAGAACTGAGCATCGAACTAAAATGCCATACACGGATGCTGTTATACATGAAATTCAGAGGTTCGCTAATATCCTGCCACTGAACTTGCCTCATGAGACGACCATGGATGTCACTATCAAAGGCTATTTCATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016690-'4-6,'4-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCCATCCTTGGACCCT
R:
ACAGCATCCGTGTATGGCATT
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]