BtaEX6111344 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42306963-42307882:-
Coord C1 exon
chr25:42307709-42307882
Coord A exon
chr25:42307271-42307409
Coord C2 exon
chr25:42306963-42307147
Length
139 bp
Sequences
Splice sites
3' ss Seq
GGACCCGCCCACTTCTGCAGGAG
3' ss Score
5.95
5' ss Seq
AGAGTGAGC
5' ss Score
4.22
Exon sequences
Seq C1 exon
CTCTTCAACCTCTACCCGCGGCTCGGGGCCCTCCTCCAGCTGCACCGGCCGGTCCTGCGCAAGATCGAGGAGGTGCGGGCCATCCTGAGGGCCCTCCTGGAGGCGAGGCGGCACCGCACACCCCCGCGAGGGCCACAGCAGAGCTACCTGGACGCCCTGATCCAGCAGGGCCAG
Seq A exon
GAGAAAGACCCCGAGGGCCTGTTTACCGAGGCCAACGTGGTGGCCTGTGTCCTGGACATGGTCATGGCCGGCACGGAGACCACCGCCGCCACACTGCAGTGGGCCGCCCTCCTGATGGGCAAGCACCCGCGCGTGCAGA
Seq C2 exon
GCCGTGTGCAGGAGGAGCTGGACCGCGTGCTGGGGCCCGCGCGGCTCCCGCGGCCAGAGGACGTGCACGCCCTGCCCTATACTAACGCCGTGCTGCACGAAGTGCAGCGCTTCATCACGCTGCTGCCCCACGCGCCGCGGTGCACGGTCGCCAACACCCAGCTGGGCCCCTACCTGCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAACCTCTACCCGCGG
R:
GTTAGTATAGGGCAGGGCGTG
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]