GgaEX6012105 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr14:2262671-2263614:-
Coord C1 exon
chr14:2263447-2263614
Coord A exon
chr14:2263184-2263325
Coord C2 exon
chr14:2262671-2262855
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTATTTCCCGACAGGAG
3' ss Score
9.58
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
CTATTTAATTTCTACCCATTTCTTGGATTTCTTCTTAAACCTCACAAGATGATACTGAAAAAAGTAGAAGAGGTGTGTGTGATCCTAAGGAAACGTATCCAGGAAAGCAAAGCAAATATTAGTGAAAACAACCTGACGAGCTACATTGATGCGCTGGTCTTCAAACAA
Seq A exon
GAGGATAATAAAAGCAATACCCTCTTTCATGATGCAAATGTGTTGGCCTCTGCACTTGACTTGCTCATGGCTGGCACTGAAACAACGTCCACCACCCTGCAGTGGGCCGTCCTGCTGATGATGAAGTACCCCGAGATTCAAA
Seq C2 exon
AAAAGGTGCATGCAGAGATTGAGCGCGTTCTTGGCCCTGACTGCCCGCCTACCTTTGAGGACCGGAAAAACATGCCCTTCACCAACGCGGTCATCCACGAGGTGCAGAGATTTGTCACCCTTCTGCCGCATGTTCCACGGTGCACCTCTGCTGACACTCGTTTTAAAGGCTATTTCATACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-'8-10,'8-8,10-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAACGTATCCAGGAAAGCA
R:
AAACGAGTGTCAGCAGAGGTG
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]