HsaEX6006789 @ hg38
Exon Skipping
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450 family 2 subfamily W member 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr7:986624-987531:+
Coord C1 exon
chr7:986624-986797
Coord A exon
chr7:987107-987245
Coord C2 exon
chr7:987347-987531
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCACGCCTCTGCAGGGG
3' ss Score
8.62
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CTGTTCAACGTCTACCCATGGCTCGGGGCCCTGCTCCAGCTGCACCGGCCCGTCCTGCGCAAGATCGAGGAGGTCCGTGCCATTCTGAGGACCCTCCTGGAGGCGCGGAGGCCCCACGTGTGCCCGGGGGACCCCGTGTGCAGCTATGTGGACGCCCTGATCCAGCAGGGACAG
Seq A exon
GGGGATGACCCCGAGGGCCTGTTTGCTGAGGCCAACGCGGTGGCCTGCACCCTGGACATGGTCATGGCCGGGACGGAGACGACCTCGGCCACGCTGCAGTGGGCCGCACTTCTGATGGGCCGGCACCCGGACGTGCAGG
Seq C2 exon
GCCGGGTGCAGGAGGAGCTAGACCGCGTGCTGGGCCCTGGGCGGACTCCCCGGCTGGAGGACCAGCAGGCTCTGCCCTACACAAGCGCCGTGCTCCACGAGGTGCAGCGGTTCATCACGCTCCTGCCGCACGTGCCCCGCTGCACCGCGGCCGACACACAGCTGGGCGGCTTCCTGCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067-'4-10,'4-9,5-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACGTCTACCCATGGCTC
R:
CGCTTGTGTAGGGCAGAGC
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains