MmuEX7003095 @ mm10
Exon Skipping
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139355554-139356452:+
Coord C1 exon
chr5:139355554-139355727
Coord A exon
chr5:139356050-139356188
Coord C2 exon
chr5:139356268-139356452
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCTGACCACCCTCCCTGCAGGAA
3' ss Score
11.53
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CTATTCAACACGTTCCCCCGGCTGGGGGCCTTCCTGCGGTTGCACAGGCCGGTCTTGAGCAAGATCGAGGAGGTGCGCACCATCCTGAGAACCCTGCTGGAAACGCGGAGACCACCCTTGCCAACGGGCGGTCCCGCGCAGAGTTATGTAGAAGCTCTGCTTCAGCAGGGCCAG
Seq A exon
GAAGATGACCCTGAGGACATGTTTGGCGAGGCCAATGTCCTGGCCTGTACACTGGACATGGTCATGGCTGGAACAGAGACCACGGCGGCCACGCTGCAGTGGGCCGTCTTCCTGATGGTTAAGCACCCACATGTGCAGG
Seq C2 exon
GTCGCGTGCAGGAGGAACTGGACCGAGTGCTGGGTCCTGGGCAGCTGCCTCAACCAGAGCACCAGCGAGCACTGCCCTACACCAGTGCTGTGTTGCATGAGGTCCAGCGGTACATCACACTCCTGCCCCATGTGCCCCGCTGCACAGCTGCTGACATCCAGCTGGGTGGCTACCTGCTCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541-'6-10,'6-9,10-10=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.064 C2=0.306
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGAGCAAGATCGAGGAGGT
R:
ATGGGGCAGGAGTGTGATGTA
Band lengths:
253-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types