GgaEX6012105 @ galGal3
Exon Skipping
Gene
ENSGALG00000004050 | F1NWE0_CHICK
Description
NA
Coordinates
chr14:2269326-2270269:-
Coord C1 exon
chr14:2270099-2270269
Coord A exon
chr14:2269839-2269980
Coord C2 exon
chr14:2269326-2269510
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTCTGTTTATTTCCCGACAGGAG
3' ss Score
9.58
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
CTATTTAATTTCTACCCATTTCTTGGATTTCTTCTTAAACCTCACAAGATGATACTGAAAAAAGTAGAAGAGGTGTGTGTGATCCTAAGGAAACGTATCCAGGAAAGCAAAGCAAATATTAGTGAAAACAACCTGACGAGCTACATTGATGCGCTGGTCTTCAAACAAGAG
Seq A exon
GAGGATAATAAAAGCAATACCCTCTTTCATGATGCAAATGTGTTGGCCTCTGCACTTGACTTGCTCATGGCTGGCACTGAAACAACGTCCACCACCCTGCAGTGGGCCGTCCTGCTGATGATGAAGTACCCCGAGATTCAAA
Seq C2 exon
AAAAGGTGCATGCAGAGATTGAGCGCGTTCTTGGCCCTGACTGCCCGCCTACCTTTGAGGACCGGAAAAACATGCCCTTCACCAACGCGGTCATCCACGAGGTGCAGAGATTTGTCACCCTTCTGCCGCATGTTCCACGGTGCACCTCTGCTGACACTCGTTTTAAAGGCTATTTCATACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004050-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.3=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTATCCAGGAAAGCAAAGCA
R:
AAACGAGTGTCAGCAGAGGTG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]