GgaEX6035321 @ galGal3
Exon Skipping
Gene
ENSGALG00000013571 | F1NUN5_CHICK
Description
NA
Coordinates
chr4:63224610-63227183:+
Coord C1 exon
chr4:63224610-63224784
Coord A exon
chr4:63226617-63226792
Coord C2 exon
chr4:63227088-63227183
Length
176 bp
Sequences
Splice sites
3' ss Seq
TAAGTGTCTTTTTCCCTCAGTGT
3' ss Score
8.65
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
TATGTATGCAGCATTCTTCAAGAAATATTAGGATAATTGGAGGGACGGACTCTTCCCCTGGTGAATGGCCTTGGCAAGTGAGCTTACATGTGAAGCTATCTCGCCAGAGACACCTCTGTGGAGGCTCTATCATCAGTAACCAGTGGATCCTTACAGCTGCCCACTGTTTCATGAG
Seq A exon
TGTTCAGAACCCCAACATTTGGCGTGTTTATGCTGGTGTTTTAAAACAATCAGAAATAAATGAGAATACACCTTTCTTCAGAGTGGAAGAGATTATTATTCATCCTCAGTATAATTCTGCACAGACTGGATATGACATTGCTTTACTGAAGCTTGATAAGGCTATGAATTTTACTG
Seq C2 exon
ATCTTCAACTTCCTATTTGCCTGCCATCAAAAGAAGAGGCTAGCATTCTCTATACTGACTGCTGGGTAATTGGATGGGGTTACAGGAAGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.3=79.7)
A:
PF0008921=Trypsin=FE(25.5=100)
C2:
PF0008921=Trypsin=FE(13.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATAATTGGAGGGACGGACT
R:
CTCTTTCCTTCCTGTAACCCCA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]