MmuEX6035495 @ mm9
Exon Skipping
Gene
ENSMUSG00000031645 | F11
Description
coagulation factor XI [Source:MGI Symbol;Acc:MGI:99481]
Coordinates
chr8:46328220-46332260:-
Coord C1 exon
chr8:46332101-46332260
Coord A exon
chr8:46330983-46331158
Coord C2 exon
chr8:46328220-46328315
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCATTCTGTTTGTTCCTTAGGAT
3' ss Score
11.43
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
TGTGCACAACTAAAATCAACCCCAGAGTGGTAGGAGGAGCTGCGTCTGTTCACGGTGAGTGGCCATGGCAGGTGACTCTGCACATCAGCCAGGGACACCTGTGTGGAGGCTCCATCATTGGAAACCAATGGATACTGACAGCAGCTCATTGTTTCTCTGG
Seq A exon
GATAGAGACACCTAAAAAGCTGCGTGTCTACGGTGGCATTGTAAATCAATCAGAAATAAATGAAGGGACTGCTTTCTTCAGGGTTCAAGAAATGATAATTCATGATCAGTATACGACAGCAGAAAGTGGGTATGATATTGCCCTGTTAAAACTGGAATCAGCCATGAATTACACAG
Seq C2 exon
ATTTTCAGCGGCCAATATGCCTGCCTTCCAAAGGAGATAGAAACGCAGTGCACACAGAATGCTGGGTGACTGGATGGGGGTACACAGCACTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031645-'10-12,'10-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.3=81.5)
A:
PF0008921=Trypsin=FE(25.9=100)
C2:
PF0008921=Trypsin=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAACCCCAGAGTGGTAGGA
R:
TCTTAGTGCTGTGTACCCCCA
Band lengths:
242-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: