GgaEX6035325 @ galGal3
Exon Skipping
Gene
ENSGALG00000013571 | F1NUN5_CHICK
Description
NA
Coordinates
chr4:63222803-63224079:+
Coord C1 exon
chr4:63222803-63222962
Coord A exon
chr4:63223723-63223832
Coord C2 exon
chr4:63223920-63224079
Length
110 bp
Sequences
Splice sites
3' ss Seq
TATTATTATTTTTATTATAGAAA
3' ss Score
6.65
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
ATTGTCAAATGGACATTTTTGAACACGAAGAATTTTCAGGAACGAATGTCACAAGTTTTTTCACTCCAGACACTTTTGCCTGCCAAACTATTTGTACTTATTTTCCAAACTGCTTGTTCTTTACATTCTTCACCAAGGAATGGCAAATAGAATCCCAAAG
Seq A exon
AAATCTTTGCCTCCTGAAAACATCAAGAAGTGGAATACCAGAGGCACTTACGTTACGAGAAAATGCTATTTCAGGTTTTGGTCTCCTAAATTGCAGAAGACACTTTCCTG
Seq C2 exon
CCTGCAATTCTCGCACTTACGTGCATATGAATTTTCTGGGAGATGAACTCAATGTCACTTATACTAAAGGACACAGAGCTTGTCAGCAGGTTTGCACAGACATGATCCGCTGCCAATTTTTTACCTACTTTCCCCTCCAAGAGGCATGCAATGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(61.9=96.3)
A:
PF0002421=PAN_1=PD(36.9=81.6)
C2:
PF0002421=PAN_1=PU(61.2=96.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGACACTTTTGCCTGC
R:
CCTCATTGCATGCCTCTTGGA
Band lengths:
254-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]