RnoEX6055610 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50194651-50195590:+
Coord C1 exon
chr16:50194651-50194827
Coord A exon
chr16:50195214-50195323
Coord C2 exon
chr16:50195428-50195590
Length
110 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTTTGGTCCTCTAGACA
3' ss Score
8.18
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
TTTCTCTCATCGTACAGCTTGTATCAGGGACATTTTCCCGAACACCGTGCTTGCAGACCTTAACATTGACAGCGTGTTGGCCCCAGATGCTTTTGTCTGTCGTCGCATTTGCACGCATCACCCCACGTGCCTGTTTTTTACATTCTTTACCCAAGCGTGGCCAAAAGAATCCCAGAG
Seq A exon
ACATCTTTGCCTCCTTAAAACATCTGAAAGCGGATTTCCAAGCACACGCATCACAAAGAGCAACGCCCTTTCCGGGTTCAGTCTCCAGCACTGCAGGCACAGCATCCCAG
Seq C2 exon
TATTCTGTCATCCGAACTTTTACAACGACACTGATTTCTTGGGAGAAGAACTGGACATCGTCGATGTGAAAGGCAAAGAATCCTGCCAGAAAATGTGCTCTGACAACGTCCGCTGCCAGTTCTTTACCTATTATCCCTCTCGAGGATCTTGCAGTGAGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
PF142951=PAN_4=PD(4.3=3.3),PF0002421=PAN_1=PU(61.9=86.7)
A:
PF0002421=PAN_1=PD(36.9=81.6)
C2:
PF0002421=PAN_1=PU(71.2=94.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCCCGAACACCGTGCTT
R:
CGGACGTTGTCAGAGCACATT
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]