GgaEX6037308 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:16018707-16020782:-
Coord C1 exon
chr5:16020591-16020782
Coord A exon
chr5:16019778-16020025
Coord C2 exon
chr5:16018707-16018890
Length
248 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTTATGTTTTTGCAGGCT
3' ss Score
8.63
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
CCTCTTTCCAAATACAGCCGGGTGAGTCATGGTGGCTGTGTAACTGCACCAATGCTATATGTGTAGAAAACAATACTGTTGTGATCGTTCCAGTAATCTGTGAGCCACCTCCTAAACCCACCTGCTCCAATGGGCTTGCTCCTGTGCAAGTCATTGATGATGATCTATGCTGTTGGCATTGGGAGTGTGATT
Seq A exon
GCTACTGCACTGGCTGGGGAGACCCACATTATATGACGTTTGATGGACTGTACTACAGCTATCAAGGGAATTGCACATATGTTCTTGTGGAAGAGATTGAAAAAAGAGTTGACAACTTTGGTGTCTACATTGATAACTACCATTGTGATGCACGGGATATAGTTTCCTGTCCACGAGCACTCATTGTGAGACATGAGACTCAGGAAGTGCGCATTGTAACAGTGAAACCAAATACCCTGGAAGTAGAG
Seq C2 exon
GTGACTGTAAACAAACAGCCTGTGGCTTTGCCTTATAAGAAATTTGGCTTGAGCGTCTATGAGTCAGGCATAAATCGTGTAGTGGAAATTCCTGAACTTAAAATGAATGTGTCCTTCAATGGCTTGTCATTTTCTATCAGAATGCCCTACAGCCTGTTTGGAAACAACACTCAAGGACAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.3=96.4)
C2:
PF0009420=VWD=FE(38.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGTGGCTGTGTAACTGC
R:
TGACAAGCCATTGAAGGACACA
Band lengths:
295-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]