MmuEX6015334 @ mm9
Exon Skipping
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148931877-148933562:+
Coord C1 exon
chr7:148931877-148932051
Coord A exon
chr7:148932523-148932770
Coord C2 exon
chr7:148933379-148933562
Length
248 bp
Sequences
Splice sites
3' ss Seq
TTATGGAACTTTTCCCACAGGCT
3' ss Score
8.59
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTTAATGAGACCTGGTGGCTGTGTAACTGTACTATGGCTATTTGCAATCATGACAACGTAGTGGAGATTGTGCCGCTGAAGTGCGATCCCCCACCCATGCCCACCTGTGCCAATGGCCTCAAACCTGTGCGTGTTCCTGATGCTGATAACTGCTGCTGGCACTGGGAATGTGACT
Seq A exon
GCTACTGCACTGGCTGGGGGGACCCACACTTTGTCACCTTCGATGGGCTCTACTACAGTTACCAGGGTAACTGTACCTATGTGCTGGTGGAGGAGATTACCCCCACAGTGGACAACTTTGGGGTCTACATTGACAACTACCACTGTGATGCCAATGACAAGGTGTCCTGCCCCCGCACACTTATTGTGCGCCACGAGACCCAGGAAGTACAGATCAAGACCGTGAGGATGATGCCCATTGAGGTGGAG
Seq C2 exon
GTACAGGTGAACAAGCAGTTAGTGGCTTTGCCCTACAAGAAGTATGGGCTGGAGGTATACGAGTCTGGCATCAACATTGTGGTGAACATCTCCAGGCTAGAAGCCAAGATCTCCTACAATGGCCTTTCTTTCTCCATCCGGCTGCCCTACAAACTGTTTGGCAACAACACAAAGGGCCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-'36-37,'36-36,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009420=VWD=PU(50.3=96.4)
C2:
PF0009420=VWD=FE(38.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGTGGCTGTGTAACTG
R:
CCGGATGGAGAAAGAAAGGCC
Band lengths:
308-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: