GgaEX6037337 @ galGal3
Exon Skipping
Gene
ENSGALG00000020492 | MUC6_CHICK
Description
NA
Coordinates
chr5:16122183-16124453:+
Coord C1 exon
chr5:16122183-16122309
Coord A exon
chr5:16123126-16123213
Coord C2 exon
chr5:16124344-16124453
Length
88 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTGATTTTATTTTAGGTT
3' ss Score
10.47
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGTCATCAAACTGCCTTACGCCAGCAATGGAATTCAAATAGCACCTTATGGGCGCAGTGTCCGCCTTGTTGCCAAACTGATGGAGATGGAACTAGTTGTCATGTGGAACAATGAGGACTACCTCATG
Seq A exon
GTTTTGACTGAAAAAAAATACATGGGGAAGACTTGTGGAATGTGTGGAAATTATGATGGCTATGAACTAAATGACTTTGTGAGTGAAG
Seq C2 exon
GTAAATTACTGGATACATACAAGTTTGCTGCATTACAAAAAATGGATGATCCATCGGAGATCTGCCTGTCTGAGGAGATATCAATTCCTGCCATTCCTCACAAAAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020492-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(31.1=100)
A:
PF0009420=VWD=FE(21.5=100)
C2:
PF0009420=VWD=PD(0.7=2.7),PF087426=C8=PU(4.1=8.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAGCACCTTATGGGCGCAG
R:
TCCTCAGACAGGCAGATCTCC
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]