HsaEX6000234 @ hg19
Exon Skipping
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7517]
Coordinates
chr11:1030947-1031733:-
Coord C1 exon
chr11:1031607-1031733
Coord A exon
chr11:1031169-1031259
Coord C2 exon
chr11:1030947-1031056
Length
91 bp
Sequences
Splice sites
3' ss Seq
AGCAGAGCCGTCTCCCGCAGGTT
3' ss Score
4.01
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GGTCATCAGCCTGCCCTATACCAGCAATGGACTCCAGATCACACCCTTCGGCCAGAGCGTGCGGCTGGTGGCCAAGCAGCTGGAGCTGGAGCTGGAAGTCGTGTGGGGTCCTGACAGCCACCTCATG
Seq A exon
GTTCTGGTGGAGCGGAAGTACATGGGTCAGATGTGCGGGCTCTGCGGGAACTTTGACGGGAAGGTGACCAACGAGTTTGTCAGTGAGGAGG
Seq C2 exon
GCAAGTTCCTGGAACCCCACAAGTTTGCTGCCCTCCAGAAGCTGGACGACCCCGGCGAGATCTGCACCTTCCAGGACATCCCCAGCACCCACGTCCGGCAGGCCCAGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(28.2=100)
A:
PF0009420=VWD=FE(20.1=100)
C2:
PF0009420=VWD=PD(0.7=2.7),PF087426=C8=PU(4.1=8.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGATCACACCCTTCGG
R:
TGTCCTGGAAGGTGCAGATCT
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)