RnoEX6005586 @ rn6
Exon Skipping
Gene
ENSRNOG00000056817 | Muc6
Description
mucin 6, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:628826]
Coordinates
chr1:214626319-214627045:-
Coord C1 exon
chr1:214626919-214627045
Coord A exon
chr1:214626512-214626602
Coord C2 exon
chr1:214626319-214626428
Length
91 bp
Sequences
Splice sites
3' ss Seq
CCAACGGTATCACCCCACAGGTC
3' ss Score
7.52
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGTTGTTAGCCTGCCCTACACCAGCAATGGCCTCCAGATCACACCATACGGCCAGAGCGTGCAGCTGGTGGCCAAGCAGCTGGAGCTGGAGCTAGTCATCATGTGGGGTCCAGACGCCCACCTTATG
Seq A exon
GTCCTGGTAGAGAAGAAGTACATGGGCAAGCTATGTGGACTGTGTGGGAACTTTGATGGAAAGATAGACAATGAATTTCTCAGTGAGGATG
Seq C2 exon
GCAAACTTCTGGAACCCCATAAGTACGCTACACTTCAGAAGCTAGATGACCCCAATGAGATCTGTGCCCATGAAGCTATCCCCAGTCCCAGCATCCTGAAGACCAGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056817-'3-7,'3-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.013 C2=0.027
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(28.0=100)
A:
PF0009420=VWD=FE(20.0=100)
C2:
PF0009420=VWD=PD(2.6=2.7),PF087426=C8=PU(4.1=8.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCACACCATACGGCCAGA
R:
CTGGGACTGGGGATAGCTTCA
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]