GgaEX6040356 @ galGal3
Exon Skipping
Gene
ENSGALG00000005795 | F1NAB8_CHICK
Description
NA
Coordinates
chr6:18660152-18661916:-
Coord C1 exon
chr6:18661767-18661916
Coord A exon
chr6:18660741-18660901
Coord C2 exon
chr6:18660152-18660328
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTTTATGTTGCAGAGA
3' ss Score
9.58
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCATTGTGACCAGCAATGGGGAGAGCTGGAGGCAAATGCGACGATTTGCCCTCACCACCCTGCGTGATTTTGGAATGGGGAAGAAGGGCATTGAGGAGCGAATCCAGGAGGAAGCTCGTTTTCTGGTGGAGAGGATCAGAAACACACACG
Seq A exon
AGAAACCTTTCAATCCTACTGTGTTTTTAATGCATGCTGTTTCCAACATAATCTGTTCCACTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGACGAAAACGAAAGGTACCAGAACAGAATACAAACACAG
Seq C2 exon
CTCTACAATTTCTTCCCAACCATCCTGGATTATTTGCCTGGCCCTCATAAAACACTAATAAAAAGCATTGAAACCGTTGATGACTTCATTACTGAAATCATAAGAGCACACCAGGAATCCTTCGATCCCAGCTGCCCTCGAGATTTTATTGATGCTTTCATTAACAAAATGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005795-'12-13,'12-11,15-13=AN
Average complexity
A_S
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.0=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCGACGATTTGCCCTC
R:
CGAAGGATTCCTGGTGTGCTC
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]