GgaEX6040356 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C5A9]
Coordinates
chr6:16737779-16739543:-
Coord C1 exon
chr6:16739394-16739543
Coord A exon
chr6:16738368-16738528
Coord C2 exon
chr6:16737779-16737955
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTGTTTATTTTATGTTGCAGAGA
3' ss Score
9.58
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GCATTGTGACCAGCAATGGGGAGAGCTGGAGGCAAATGCGACGATTTGCCCTCACCACCCTGCGTGATTTTGGAATGGGGAAGAAGGGCATTGAGGAGCGAATCCAGGAGGAAGCTCGTTTTCTGGTGGAGAGGATCAGAAACACACACG
Seq A exon
AGAAACCTTTCAATCCTACTGTGTTTTTAATGCATGCTGTTTCCAACATAATCTGTTCCACTGTATTTGGGGATCGGTTTGACTACGAGGACAAGAAATTTCTGGATTTAATTGAGATGCTGGACGAAAACGAAAGGTACCAGAACAGAATACAAACACAG
Seq C2 exon
CTCTACAATTTCTTCCCAACCATCCTGGATTATTTGCCTGGCCCTCATAAAACACTAATAAAAAGCATTGAAACCGTTGATGACTTCATTACTGAAATCATAAGAGCACACCAGGAATCCTTCGATCCCAGCTGCCCTCGAGATTTTATTGATGCTTTCATTAACAAAATGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026793-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(14.1=100)
A:
PF0006717=p450=FE(15.0=100)
C2:
PF0006717=p450=FE(16.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCGACGATTTGCCCTC
R:
CGAAGGATTCCTGGTGTGCTC
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]