GgaEX6040749 @ galGal3
Exon Skipping
Gene
ENSGALG00000007622 | Q8QGG9_CHICK
Description
NA
Coordinates
chr6:23830217-23830725:+
Coord C1 exon
chr6:23830217-23830288
Coord A exon
chr6:23830410-23830481
Coord C2 exon
chr6:23830654-23830725
Length
72 bp
Sequences
Splice sites
3' ss Seq
GCTGTTGCTTTCTCCTGCAGGCA
3' ss Score
11.24
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGACCTGAGCGAGAACTTCATCCAGGCCATCCCCAGGAAGGCTTTCCGTGGGGCCACAGACCTCAAGAACTT
Seq A exon
GCAACTGGACAAGAACCAGATCAGCTGCATTGAGGATGGGGCTTTTCGGGCTCTGCGGGGGCTGGAAGTCCT
Seq C2 exon
GACACTGAACAACAACAACATCACGTCCATCCCCGTCTCCAGCTTCAACCACATGCCCAAGCTGCGAACGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007622-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.0)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGAGCGAGAACTTCAT
R:
AACGTTCGCAGCTTGGGC
Band lengths:
144-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]