DreEX6059538 @ danRer10
Exon Skipping
Gene
ENSDARG00000044954 | slit1a
Description
slit homolog 1a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030722-3]
Coordinates
chr13:464905-465502:-
Coord C1 exon
chr13:465431-465502
Coord A exon
chr13:465270-465341
Coord C2 exon
chr13:464905-464976
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTGTGTTTATCACAGGCA
3' ss Score
8.06
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGACCTGAGTGAGAACTTCATCCAGGCGATTCCTCGAAAGGCCTTCAGAGGAGCGACGGACATCAAAAACCT
Seq A exon
GCAGCTGGACAAGAACCACATCAGCTGCATCGAGGATGGAGCGTTCAGAGCCATGCGCGGGCTAGAAGTGCT
Seq C2 exon
AACTCTGAACAACAACAACATCAGCAGCATCCCAGTGTCCAGCTTCAACCACATGCCCAAGCTCCGGACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044954-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.0)
A:
PF138551=LRR_8=FE(39.3=100)
C2:
PF138551=LRR_8=FE(39.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGAGTGAGAACTTCATCC
R:
AATGTCCGGAGCTTGGGCAT
Band lengths:
144-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]