GgaEX6041705 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV85]
Coordinates
chr7:6905159-6906295:+
Coord C1 exon
chr7:6905159-6905296
Coord A exon
chr7:6905934-6906029
Coord C2 exon
chr7:6906228-6906295
Length
96 bp
Sequences
Splice sites
3' ss Seq
AGACCTGCCTTTGTCCTCAGACT
3' ss Score
8.57
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTTCCCCTCAGGTCATCCAACTGGCAGAGGGAGAGTCTCTGTGCCTGTTGTCATTTGCATTATCCTGGGGGCTCTTCTCTGCCTGCTCCTGGCCCTCCTGGCTGGGCAGGTGCAAAGTGCCAAGGCCCAGCGCAGAG
Seq A exon
ACTCCAGGAGAAATGAGGAGTCCTTCCCCGAGGTTGTGTATGAGGAGATCAGATGCAGCTATGCATGGGAGAAGCAGACAATGTTTGTTCACTCAG
Seq C2 exon
GTGATCCAGAAGATGGCTATGATGATGCTAAGGAGGTTTCTGAACCTGAGAATGATCCTGTCTCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213-'10-13,'10-11,11-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.152 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTCATCCAACTGGCAGA
R:
ACCTCCTTAGCATCATCATAGCCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]