GgaINT0045278 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NV85]
Coordinates
chr7:6905159-6906029:+
Coord C1 exon
chr7:6905159-6905296
Coord A exon
chr7:6905297-6905933
Coord C2 exon
chr7:6905934-6906029
Length
637 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
AGACCTGCCTTTGTCCTCAGACT
3' ss Score
8.57
Exon sequences
Seq C1 exon
ATTTCCCCTCAGGTCATCCAACTGGCAGAGGGAGAGTCTCTGTGCCTGTTGTCATTTGCATTATCCTGGGGGCTCTTCTCTGCCTGCTCCTGGCCCTCCTGGCTGGGCAGGTGCAAAGTGCCAAGGCCCAGCGCAGAG
Seq A exon
GTAGGTCCTGTTCCAGTAATTCTGGAGGAGATGCCTCCTGATAGGGCTGGCAATGATGGGGAGTGTCAACAAGGAGCATGGGTAAAGTGGGGAGATAGGAGCATGTGCTGCACACTGACAGCCTGGACATTGGGCACCAGTAGCAAGAGGTGGAGAGAGCCCAGAAGCAGAGGGAGTTAATGTTGGGACAAGGGAAGAAATGGCAAAGCAATACTGGTAGGGATGGGAGTAGAGAGGAGACAGCCAAAGATGTTCCACTGTCTGCACTATGGCAGCAGTGGAGTGGGCTCTAGGGCAGAGAAGGTGCCAGGAGGATCATGGTGTACAGTCCATCACTCTGTTGTCAGGCTGCTGTGTTGTGTTGGGCACAGCCATGCTATGGACCTGAGTGGCAGAGATAAGTCAGCTCCAGGGGTCTGCAGTGGGATCTAACACAGGGGCCAAAGAAGCATGAAGGTTGTCTCTGACAGGATGGCGTGAGGCTGATGCTATCTCACACCAGGTTGTTCTCAAAGCGGATATGGCAGTGGTGCCCAAACAGCCAGCCCTGGGCTGATCCCAGGAGAGGGTGTGGGGAGAAAAGCAGAGTGCAGTCCCTCTCTACCCATCCCCAGGACAGACCTGCCTTTGTCCTCAG
Seq C2 exon
ACTCCAGGAGAAATGAGGAGTCCTTCCCCGAGGTTGTGTATGAGGAGATCAGATGCAGCTATGCATGGGAGAAGCAGACAATGTTTGTTCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002213:ENSGALT00000003467:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTCAGGTCATCCAACTG
R:
TGAGTGAACAAACATTGTCTGCT
Band lengths:
230-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]