GgaEX6041815 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9236283-9238035:-
Coord C1 exon
chr7:9237933-9238035
Coord A exon
chr7:9237707-9237834
Coord C2 exon
chr7:9236283-9236495
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTCCTCTACAGGCA
3' ss Score
11.96
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGTTTGCTATCTTGTGGAGCGTGGGCTTGCTTTGATGAATTCAACAGGATTGATTTGGAAGTGCTTTCTGTGGTTGCTCAGCAGATTTTTACTATCCAAAGAG
Seq A exon
GCATTAATTCAGGATCTGATATATTAGTATTCGAAGGAACTGAATTGAAGCTTAACCCTACATGTGCTGTCTTCATTACCATGAATCCTGGTTATGCTGGGCGCTCAGAGCTTCCAGACAATCTTAAG
Seq C2 exon
GCTCTCTTTAGAACAGTAGCTATGATGGTTCCTGATTATGCCATGATTGCAGAGATAGTTCTGTATTCTTGTGGTTTTGTTTCTGCACGACCTCTGTCTGTAAAAATTGTAGCTACGTACCGTCTGTGTTCTGAGCAGTTGTCGTCCCAGCACCATTATGATTATGGGATGAGAGCTGTGAAGTCAGTACTTACTGCTGCTGGCAACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'27-32,'27-31,28-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(14.7=100)
A:
PF127742=AAA_6=FE(18.2=100)
C2:
PF127742=AAA_6=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTATCTTGTGGAGCGTGG
R:
GGGACGACAACTGCTCAGAAC
Band lengths:
248-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]