RnoEX6039691 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60246873-60253296:-
Coord C1 exon
chr9:60253194-60253296
Coord A exon
chr9:60252955-60253082
Coord C2 exon
chr9:60246873-60247085
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGCACTTGTCGTTCCCACAGGCA
3' ss Score
10.95
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GGACTGTTATCTTGTGGAGCCTGGGCTTGCTTTGATGAGTTTAACAGAATTGATTTGGAAGTACTTTCTGTGGTTGCTCAGCAAATCCTTACTATCCAGATAG
Seq A exon
GCATTAACTCAGGTACCGAGCTCCTAGTGTTTGAAGGAACAGAACTAAAACTTGACCCCACGTGCGCTGTCTTTATTACAATGAACCCTGGGTATGCTGGGCGGTCAGAGTTGCCAGACAACCTGAAG
Seq C2 exon
GCTCTCTTCCGGACAGTTGCCATGATGGTGCCTGACTATGCCATGATTGCTGAGATCGTGCTTTATTCCTGTGGCTTTGTCACTGCACGGCCACTGTCCATAAAAATCGTGGCTACATACCGCTTGTGCTCAGAGCAACTGTCCTCCCAGCACCATTATGACTACGGGATGCGAGCCGTGAAGTCTGTGCTCACAGCTGCTGGCAATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'21-25,'21-24,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(14.7=100)
A:
PF127742=AAA_6=FE(18.1=100)
C2:
PF127742=AAA_6=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATCTTGTGGAGCCTGGGC
R:
TAATGGTGCTGGGAGGACAGT
Band lengths:
256-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]