RnoEX0028569 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60252955-60255746:-
Coord C1 exon
chr9:60255578-60255746
Coord A exon
chr9:60253194-60253296
Coord C2 exon
chr9:60252955-60253082
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTATTATTCTTTCCTCCCAGGGA
3' ss Score
10.66
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
GACCTTATTTGGAGCCCTTCACCTGCACCTTGGAGGAGCACCTGAGGGTCCAGCTGGCACTGGAAAGACAGAAACAACCAAGGATTTAGCAAAAGCTGTTGCCAAACAGTGTGTTGTTTTCAACTGCTCCGATGGGCTGGATTATTTGGCTTTAGGAAAATTCTTTAAG
Seq A exon
GGACTGTTATCTTGTGGAGCCTGGGCTTGCTTTGATGAGTTTAACAGAATTGATTTGGAAGTACTTTCTGTGGTTGCTCAGCAAATCCTTACTATCCAGATAG
Seq C2 exon
GCATTAACTCAGGTACCGAGCTCCTAGTGTTTGAAGGAACAGAACTAAAACTTGACCCCACGTGCGCTGTCTTTATTACAATGAACCCTGGGTATGCTGGGCGGTCAGAGTTGCCAGACAACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'20-24,'20-23,21-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PU(26.8=98.2)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(18.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTTGGAGCCCTTCACCTGC
R:
AATAAAGACAGCGCACGTGGG
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]