BtaEX6010431 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84917475-84921098:-
Coord C1 exon
chr2:84920930-84921098
Coord A exon
chr2:84917723-84917825
Coord C2 exon
chr2:84917475-84917602
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCATTACTCTTTTCTCCCAGGGA
3' ss Score
9.01
5' ss Seq
GAGGTAACG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AACCTTATTTGGAGCCCTTCATCTGCACCTTGGAGGAGCACCTGAGGGGCCAGCTGGCACTGGAAAGACTGAAACTACTAAAGATTTAGCCAAAGCTGTAGCCAAGCAGTGTGTTGTTTTCAACTGCTCTGATGGGTTGGACTATCTGGCTCTAGGAAAATTCTTTAAG
Seq A exon
GGACTGTTATCTTGTGGTGCCTGGGCTTGCTTCGATGAGTTTAACAGAATTGATTTGGAAGTGCTGTCTGTGGTTGCTCAACAAATTCTTACTATCCAAAGAG
Seq C2 exon
GTATTAATGCAGGCACTGATTTACTCGTGTTTGAAGGAACTGAATTAAAACTTGACCCCACGTGTGCTGTCTTTATAACAATGAACCCTGGATATGCTGGACGATCAGAACTGCCTGATAATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(24.2=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCATCTGCACCTTGGAGG
R:
TCGTCCAGCATATCCAGGGTT
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]