GgaEX6041814 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10728521-10730350:-
Coord C1 exon
chr7:10730182-10730350
Coord A exon
chr7:10728747-10728849
Coord C2 exon
chr7:10728521-10728648
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTGATGTCTGTCTTGTCCAGGGT
3' ss Score
9.1
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GACACTATTTGGTGCACTACATCTGCATCTTGGAGGTGCCCCTGAAGGTCCTGCAGGAACTGGAAAAACAGAAACAACAAAAGATTTAGCAAAGGCTGTAGCTAAGCAGTGTGTGGTTTTCAATTGTTCTGATGGATTGGATTACATCGCATTAGGAAAATTCTTTAAG
Seq A exon
GGTTTGCTATCTTGTGGAGCGTGGGCTTGCTTTGATGAATTCAACAGGATTGATTTGGAAGTGCTTTCTGTGGTTGCTCAGCAGATTTTTACTATCCAAAGAG
Seq C2 exon
GCATTAATTCAGGATCTGATATATTAGTATTCGAAGGAACTGAATTGAAGCTTAACCCTACATGTGCTGTCTTCATTACCATGAATCCTGGTTATGCTGGGCGCTCAGAGCTTCCAGACAATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(24.2=100)
A:
PF127742=AAA_6=FE(14.7=100)
C2:
PF127742=AAA_6=FE(18.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCATCTTGGAGGTGCC
R:
CGCCCAGCATAACCAGGATTC
Band lengths:
253-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]