RnoEX0028570 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60239800-60253082:-
Coord C1 exon
chr9:60252955-60253082
Coord A exon
chr9:60246873-60247085
Coord C2 exon
chr9:60239800-60239898
Length
213 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTCATGCCTCACAGGCT
3' ss Score
9.73
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GCATTAACTCAGGTACCGAGCTCCTAGTGTTTGAAGGAACAGAACTAAAACTTGACCCCACGTGCGCTGTCTTTATTACAATGAACCCTGGGTATGCTGGGCGGTCAGAGTTGCCAGACAACCTGAAG
Seq A exon
GCTCTCTTCCGGACAGTTGCCATGATGGTGCCTGACTATGCCATGATTGCTGAGATCGTGCTTTATTCCTGTGGCTTTGTCACTGCACGGCCACTGTCCATAAAAATCGTGGCTACATACCGCTTGTGCTCAGAGCAACTGTCCTCCCAGCACCATTATGACTACGGGATGCGAGCCGTGAAGTCTGTGCTCACAGCTGCTGGCAATTTGAAG
Seq C2 exon
CTGAAATATCCAAATGAAAATGAAGAAATTTTGCTGCTTAGATCTATTATTGATGTAAACCTGCCGAAGTTTTTATCCCATGATTTGCCACTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'22-27,'22-25,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(18.1=100)
A:
PF127742=AAA_6=FE(30.2=100)
C2:
PF127742=AAA_6=PD(1.9=11.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGGTACCGAGCTCCTAG
R:
TCAAAGAGTGGCAAATCATGGGA
Band lengths:
220-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]