DreEX6036408 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25206058-25213304:-
Coord C1 exon
chr9:25213177-25213304
Coord A exon
chr9:25212384-25212596
Coord C2 exon
chr9:25206058-25206156
Length
213 bp
Sequences
Splice sites
3' ss Seq
TGTGTAATTGTCTGCTGCAGGCT
3' ss Score
8.38
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTATTTCCGCCCATGCTGAGATGCTGCTGTTTGAGGGGACAGAGTTGAAACTGAACCCTACCTGTGCTGTCTTTATCACCATGAACCCTGGTTATGCAGGACGCTCCGAACTACCTGACAACCTGAAG
Seq A exon
GCTCTTTTCCGGACAGTAGCTATGATGGTGCCAGACTATGCTCTGATAGCTGAGATTGTGCTTTACTCCTGTGGATTTGTCAGAGCACGGCCGCTCTCAGTGAAGATTGTGGCTACGTATAGACTGTGCTCTGAGCAGCTCTCTTCCCAGCACCACTATGATTACGGCATGAGGGCTGTCAAATCAGTTCTGACTGCAGCAGGGAACCTGAAG
Seq C2 exon
CTCAAGTTTCCAGAGGAGAATGAAGATGTTCTGTTGCTGAGATCTATTATTGATGTCAACCTTCCCAAATTTCTGGCTCATGACCTTCCATTATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'26-27,'26-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(18.2=100)
A:
PF127742=AAA_6=FE(30.3=100)
C2:
PF127742=AAA_6=PD(1.3=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATTTCCGCCCATGCTGAGA
R:
AATGGAAGGTCATGAGCCAGA
Band lengths:
220-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]