HsaEX6017570 @ hg38
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein axonemal heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr2:195897667-195906786:-
Coord C1 exon
chr2:195906659-195906786
Coord A exon
chr2:195900282-195900494
Coord C2 exon
chr2:195897667-195897765
Length
213 bp
Sequences
Splice sites
3' ss Seq
AACTTTCTACCTACCCATAGGCT
3' ss Score
9.27
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTATTAATGCAGGTGCTGATATACTGATGTTTGAAGGAACTGAACTAAAACTTGACCCCACATGTGCTGTCTTTATAACAATGAACCCTGGGTATGCTGGGCGATCAGAACTGCCAGATAACCTGAAG
Seq A exon
GCTCTCTTTCGGACAGTAGCAATGATGGTACCTGACTATGCCATGATTGCTGAAATAGTCCTATACTCCTGTGGGTTTGTCACTGCTCGACCACTGTCTGTAAAAATTGTGGCTACGTATCGCTTGTGTTCAGAGCAGCTGTCATCTCAACATCACTACGACTATGGAATGAGAGCCGTGAAGTCAGTTCTTACTGCTGCTGGGAATCTGAAG
Seq C2 exon
CTGAAATATCCAAATGAAAATGAAGAAATTTTGCTGCTTAGATCTATCATTGATGTAAATCTGCCAAAATTTTTATCCCATGATTTACCACTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(18.2=100)
A:
PF127742=AAA_6=FE(30.3=100)
C2:
PF127742=AAA_6=PD(1.3=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTGCTGATATACTGATGT
R:
CTCAAAGAGTGGTAAATCATGGGA
Band lengths:
220-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains