GgaEX6041816 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9235179-9237834:-
Coord C1 exon
chr7:9237707-9237834
Coord A exon
chr7:9236283-9236495
Coord C2 exon
chr7:9235179-9235277
Length
213 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTATGTATTTAATAGGCT
3' ss Score
7.47
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCATTAATTCAGGATCTGATATATTAGTATTCGAAGGAACTGAATTGAAGCTTAACCCTACATGTGCTGTCTTCATTACCATGAATCCTGGTTATGCTGGGCGCTCAGAGCTTCCAGACAATCTTAAG
Seq A exon
GCTCTCTTTAGAACAGTAGCTATGATGGTTCCTGATTATGCCATGATTGCAGAGATAGTTCTGTATTCTTGTGGTTTTGTTTCTGCACGACCTCTGTCTGTAAAAATTGTAGCTACGTACCGTCTGTGTTCTGAGCAGTTGTCGTCCCAGCACCATTATGATTATGGGATGAGAGCTGTGAAGTCAGTACTTACTGCTGCTGGCAACCTGAAG
Seq C2 exon
CTGAAATATCCAATGGAAGATGAAGAAATTTTGCTACTTAGATCCATTACAGATGTCAACCTGCCTAAATTCTTGTCTCATGATTTACCACTTTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'28-33,'28-32,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(18.2=100)
A:
PF127742=AAA_6=FE(30.3=100)
C2:
PF127742=AAA_6=PD(1.3=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAGGAACTGAATTGAAGCT
R:
TCAAAAAGTGGTAAATCATGAGACA
Band lengths:
196-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]