BtaEX6010433 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84903969-84917602:-
Coord C1 exon
chr2:84917475-84917602
Coord A exon
chr2:84907280-84907492
Coord C2 exon
chr2:84903969-84904067
Length
213 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTCCACTCCCATAGGCG
3' ss Score
9.91
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTATTAATGCAGGCACTGATTTACTCGTGTTTGAAGGAACTGAATTAAAACTTGACCCCACGTGTGCTGTCTTTATAACAATGAACCCTGGATATGCTGGACGATCAGAACTGCCTGATAATCTAAAG
Seq A exon
GCGCTCTTTCGGACAGTAGCAATGATGGTGCCTGACTACGCTATGATTGCTGAAATCGTCCTGTACTCCTGTGGCTTTGTCACAGCTCGGCCACTGTCAGTGAAGATTGTGGCTACATATCGCCTGTGTTCAGAGCAGTTGTCGTCACAGCATCACTATGACTATGGAATGAGAGCTGTGAAGTCAGTGCTTACCGCTGCCGGGAATCTAAAG
Seq C2 exon
CTGAAATATCCAAATGAAAATGAAGAAATTCTGCTGCTTAGATCTATTATTGATGTAAATTTGCCGAAATTTTTATCCCACGATTTACCACTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'27-29,'27-28,28-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(18.2=100)
A:
PF127742=AAA_6=FE(30.3=100)
C2:
PF127742=AAA_6=PD(1.3=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCACTGATTTACTCGTGTTTGA
R:
TCAAAGAGTGGTAAATCGTGGGA
Band lengths:
216-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]