HsaEX6017570 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196762391-196771510:-
Coord C1 exon
chr2:196771383-196771510
Coord A exon
chr2:196765006-196765218
Coord C2 exon
chr2:196762391-196762489
Length
213 bp
Sequences
Splice sites
3' ss Seq
AACTTTCTACCTACCCATAGGCT
3' ss Score
9.27
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTATTAATGCAGGTGCTGATATACTGATGTTTGAAGGAACTGAACTAAAACTTGACCCCACATGTGCTGTCTTTATAACAATGAACCCTGGGTATGCTGGGCGATCAGAACTGCCAGATAACCTGAAG
Seq A exon
GCTCTCTTTCGGACAGTAGCAATGATGGTACCTGACTATGCCATGATTGCTGAAATAGTCCTATACTCCTGTGGGTTTGTCACTGCTCGACCACTGTCTGTAAAAATTGTGGCTACGTATCGCTTGTGTTCAGAGCAGCTGTCATCTCAACATCACTACGACTATGGAATGAGAGCCGTGAAGTCAGTTCTTACTGCTGCTGGGAATCTGAAG
Seq C2 exon
CTGAAATATCCAAATGAAAATGAAGAAATTTTGCTGCTTAGATCTATCATTGATGTAAATCTGCCAAAATTTTTATCCCATGATTTACCACTCTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(18.2=100)
A:
PF127742=AAA_6=FE(30.3=100)
C2:
PF127742=AAA_6=PD(1.3=9.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTGCTGATATACTGATGT
R:
CTCAAAGAGTGGTAAATCATGGGA
Band lengths:
220-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)